Release 2026.2.4#766
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- Add `src/mavedb/lib/hgnc/client.py` with `fetch_gene_info()` that queries the HGNC REST API and returns a `HGNCGeneInfo` dataclass (symbol, name, hgnc_id, locus_group, location, omim_id) - Add `HGNCGeneNotFoundError` and `HGNCServiceError` domain exceptions to `lib/exceptions.py` - Add `HGNC_REST_BASE_URL` constant and package `__init__` files - Add unit and network integration tests for the new client
- Add `GET /genes/{symbol}` router that fetches HGNC gene identity
and returns paginated published score sets targeting that gene
- Add `GeneResponse` view model with gene metadata and score set
pagination fields (limit, offset, total, total_scored_variants)
- Register the genes router in `server_main.py`
- Add `GeneSymbolConverter` for URL path parameter validation
- Add router tests covering happy path and error cases
Add `pytest.importorskip("starlette")` guard to both HGNC client test
files, since the logging context module depends on starlette and would
cause an ImportError in environments where starlette is absent.
- Trigger CI on pull_request events in addition to push - Run full test suite on release-* branches alongside main - Add lcov coverage reporting and Coveralls upload to the optional-dependencies job (Python 3.11) - Remove redundant run-tests-3_11 job; fold coverage into the existing optional-deps matrix entry - Ignore generated coverage/ directory in .gitignore
…ch ref - Restrict push trigger to main and release-* branches only, so that direct pushes to feature branches no longer trigger the workflow - Replace branch-ref conditions (github.ref comparisons) with github.event_name checks: fast tests run on pull_request, full tests run on push - Update step names to reflect the new PR/push framing
…eralls-ci-action ci: Add Coveralls Reporting
…pi-support feat: Gene Info Endpoint
Coverage Report for CI Build 27219389022Warning No base build found for commit Coverage: 89.015%Details
Uncovered Changes
Coverage RegressionsRequires a base build to compare against. How to fix this → Coverage Stats
💛 - Coveralls |
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