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EBISPOT

EMBL-EBI Samples, Phenotypes, and Ontologies Team

61 followers
https://www.ebi.ac.uk/spot/

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efo efo Public

Github repo for the Experimental Factor Ontology (EFO)

Python 63 15
DUO DUO Public

Ontology for consent codes and data use requirements

Makefile 68 17
CMPO CMPO Public

Cellular Microscopy Phenotype Ontology

Python 6 2
ols4 ols4 Public

The EMBL-EBI Ontology Lookup Service (OLS)

Java 89 40

Repositories

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Showing 10 of 75 repositories

gwas-sumstats-tools Public
gwas-sumstats-tools

EBISPOT/gwas-sumstats-tools’s past year of commit activity

Python 12 Apache-2.0 1 3 4 Updated May 21, 2026
oxo2 Public
A SSSOM compliant implementation of OxO that is backwards compatible with OxO version 1

EBISPOT/oxo2’s past year of commit activity

Java 1 Apache-2.0 0 0 10 Updated May 21, 2026
ols4 Public
The EMBL-EBI Ontology Lookup Service (OLS)

EBISPOT/ols4’s past year of commit activity

Java 89 Apache-2.0 40 86 (1 issue needs help) 13 Updated May 21, 2026
PEGASUS Public
Predicted effector gene standard

EBISPOT/PEGASUS’s past year of commit activity

TypeScript 1 0 0 8 Updated May 21, 2026
zooma2 Public

EBISPOT/zooma2’s past year of commit activity

Java 0 Apache-2.0 0 0 0 Updated May 20, 2026
otar_profiler Public
Pipeline for creating Open Targets profile and slim files from EFO.

EBISPOT/otar_profiler’s past year of commit activity

Ruby 4 0 0 0 Updated May 20, 2026
efo Public
Github repo for the Experimental Factor Ontology (EFO)

EBISPOT/efo’s past year of commit activity

Python 63 15 193 (2 issues need help) 12 Updated May 20, 2026
gwas-sumstats-harmoniser Public
GWAS Summary Statistics Data Harmonisation

EBISPOT/gwas-sumstats-harmoniser’s past year of commit activity

Python 28 21 15 (1 issue needs help) 10 Updated May 19, 2026
GrEBI Public
HPC aggregation pipeline and API/MCP server for LLM-mediated biomedical data integration

EBISPOT/GrEBI’s past year of commit activity

Jupyter Notebook 4 Apache-2.0 3 16 0 Updated May 19, 2026
cohort-ontology Public
A lightweight ontology for consistent identification and description of human cohorts. It defines a unique cohort identifier with minimal metadata, enabling linkage, discovery, and integration of cohort-related data while supporting both named and implicitly defined cohorts.

EBISPOT/cohort-ontology’s past year of commit activity

Makefile 2 0 0 0 Updated May 19, 2026

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