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Integration Testing CI Test Failure on python 3.14 with prerelease dependencies

Status: Open.

#1121 In scverse/spatialdata;

· scverse-issue-creator opened on May 8, 2026

Integration Testing CI Test Failure on python 3.14

Status: Open.

#1120 In scverse/spatialdata;

· scverse-issue-creator opened on May 8, 2026

Integration Testing CI Test Failure on python 3.12

Status: Open.

#1119 In scverse/spatialdata;

· scverse-issue-creator opened on May 8, 2026

Error attempting to transform xenium transcript coordinate using transform()

Status: Open.

#1105 In scverse/spatialdata;

· rached-97 opened on Apr 4, 2026

Refactor and speed-up SpatialData query funtions

Status: Open.

#1101 In scverse/spatialdata;

· LucaMarconato opened on Mar 26, 2026

join_spatialelement_table crashes when obs index name matches an existing column

Status: Open.

#1099 In scverse/spatialdata;

· timtreis opened on Mar 25, 2026

PointsModel warning

Status: Open.

#1098 In scverse/spatialdata;

· dariotommasini opened on Mar 24, 2026

More informative error when subsetting results in no observations retained in Visium HD

Status: Open.

#1096 In scverse/spatialdata;

· matt-sd-watson opened on Mar 17, 2026

transform() fails on large partitioned points with duplicate index

Status: Open.

#1095 In scverse/spatialdata;

· enric-bazz opened on Mar 17, 2026

Transfering annotations from AnnData to Spatial Data (overlap of annotations with HE image) and error saving cropped SpatialData object

Status: Open.

#1094 In scverse/spatialdata;

· Rafael-Silva-Oliveira opened on Mar 17, 2026

MuData Table for SpatialData object

Status: Open.

#1085 In scverse/spatialdata;

· SFD5311 opened on Mar 2, 2026

SpatialData repr breaks when Dask auto-partitions Parquet points

Status: Open.

#1084 In scverse/spatialdata;

· enric-bazz opened on Mar 2, 2026